Quick start

If you have downloaded the HUNT-GWAS pipeline, go to the folder where it is located.

# git clone git@gitlab.com:huntgenes/gwas_pipeline.git
cd gwas_pipeline

The GWAS analysis requires a configuration-file and dosage files to run. The configuration file is where the user defines the settings for the pipeline, and the genetic data are the files where we should look for statistically significant SNPs.

In our case, the