Welcome to the HUNT-GWAS-Pipeline documentation!¶
The HUNT-GWAS-Pipeline is a highly configurable pipeline that runs GWAS analyses, plots the results and creates ample logs to help you understand which steps were performed. No programming skill is required; the only thing the pipeline needs is a filled out configuration file.
The HUNT-GWAS pipeline leverages the innovative Snakemake workflow language to ensure reproducibility and scalability at no extra cost or additional complexity for the user.
To ensure the reproducibility across machines and clusters, each step in the workflow uses an accompanying Singularity-container with the necessary software installed.
The workflow has ample tests to quickly allow for continual innovation and contributions witout risking introducing new bugs.
Getting started